PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G305400.1.p

Common Name

LOC101766022, SETIT_030430mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 338aa MW: 36217.8 Da PI: 8.4452

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G305400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.6	2.9e-12	24	127	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr.ts 73 +W++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + + + Seita.2G305400.1.p 24 EWSEGGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAREVsahcaddaaaagkapggGGGNSAKTPNQCKNKIESMKKRYRAESAAVARAgPA 114 599******************************9999999*******987788899*************998766665367 PP trihelix 74 essstcpyfdqle 86 + ++++f +++ Seita.2G305400.1.p 115 AAGPSWRFFARMD 127 78889***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.6E-14	22	128	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MNGLPDADAA APLATAAPPQ KRDEWSEGGI VRLLEAYEAK WLLRNRAKLK WSDWVDIARE 60 VSAHCADDAA AAGKAPGGGG GNSAKTPNQC KNKIESMKKR YRAESAAVAR AGPAAAGPSW 120 RFFARMDGLL KGPAICSGQV PQAELGNSID LRAPAKAEAE VVEADFAAQL PDAGPGAFSD 180 LMNIDTNGAV PEKAEKVDNS VQKESRAADS DANVSSPRSK VANEDVEEVD KVRDRPKKRK 240 STEFDIAKSI ELLASSYLKI EHARMEMYRE TERMRAEAEI KKGEMELKRT EIMAKTHLQI 300 AKLFAKRLKE GSGKTGGSSS VTAEVDTHTK KGENGSG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G305400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137592	2e-81	AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBank	AK068834	2e-81	AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence.
GenBank	AK103673	2e-81	AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.
GenBank	AP005090	2e-81	AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBank	AP014965	2e-81	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957620.1	0.0	trihelix transcription factor ASIL2
TrEMBL	K3ZUZ9	0.0	K3ZUZ9_SETIT; Uncharacterized protein
STRING	Si030430m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-33	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Seita.2G305400.1.p
Entrez Gene	101766022