PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G277700.1.p | ||||||||
Common Name | LOC101773024, SETIT_031900mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 281aa MW: 29966.8 Da PI: 6.237 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.7 | 3.7e-12 | 116 | 161 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N +f Lr +P+ +++Ka+ L A YI +L Seita.2G277700.1.p 116 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 161 89************************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.021 | 112 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-16 | 114 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 115 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.06E-12 | 115 | 166 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 116 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-10 | 118 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDDLRLSPCN SFSPPSPPPF FSHAGHPIIE FTSCEVPEQW LLGDVVVAKN EGYDDGDDLW 60 PVGSTLSTDS ELSVQPAPPP QPAPQQQEPG ATVPAQRPGK RRGRKPGTRP DGPTVSHVEA 120 ERQRREKLNR RFCDLRAAVP TVSRMDKASL LADAAAYIAE LRARVARLEA ESRRAAAARW 180 EPPVAASSCG PPGAPGHGDE AVEVRMLGPD AAAVRATSAA PHAAARLMVA LRSLELHVQH 240 ACVTRVHGMT VQDVVVDVPA QLHDDDGLRA ALLQMLQDSG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-19 | 115 | 171 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 6e-19 | 115 | 171 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 6e-19 | 115 | 171 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 6e-19 | 115 | 171 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 6e-19 | 115 | 171 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 6e-19 | 115 | 171 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 6e-19 | 115 | 171 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 6e-19 | 115 | 171 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G277700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006525 | 6e-75 | AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03. | |||
GenBank | AP007254 | 6e-75 | AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08. | |||
GenBank | AP014965 | 6e-75 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 6e-75 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957382.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | K3ZZ68 | 0.0 | K3ZZ68_SETIT; Uncharacterized protein | ||||
STRING | Si031900m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G277700.1.p |
Entrez Gene | 101773024 |