PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.2G277500.5.p | ||||||||
Common Name | SETIT_032741mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 274aa MW: 29102 Da PI: 7.6038 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 106 | 151 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N +f Lr +P+ +++Ka+ L A YI +L Seita.2G277500.5.p 106 NHVEAERHRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 151 899***********************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.627 | 102 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-15 | 104 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.54E-11 | 105 | 156 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-15 | 106 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-9 | 106 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-10 | 108 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 274 aa Download sequence Send to blast |
MDELLSPCPS FSPPLTPFFL SHAGHPVIEF ASYEVPEQWM LDDGDNLWPV GCSLSPHSEL 60 SAPPPPPQPA PPPQQQEPIV TAPAQRPGKR RGRKPGPRRA NGPTVNHVEA ERHRREKLNR 120 RFCDLRAAVP TVSRMDKASL LADAAAYIAE LRARVARLEA ESRRAAAARW EPAVVSCGTQ 180 GADETVVEVR MLGPDAAAVR ATSAGTHAAA RLMGALRSLE LHVQHACVTR VHGLTVQDVV 240 VDVPASLQDD GGGGLRAALL QVLQGSAPAS PSS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-19 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 5e-19 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 5e-19 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 5e-19 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 5e-19 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 5e-19 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 5e-19 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 5e-19 | 105 | 161 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.2G277500.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP006525 | 2e-80 | AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03. | |||
GenBank | AP007254 | 2e-80 | AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08. | |||
GenBank | AP014965 | 2e-80 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 2e-80 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957381.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | A0A368Q3D3 | 0.0 | A0A368Q3D3_SETIT; Uncharacterized protein | ||||
TrEMBL | K4A1J8 | 0.0 | K4A1J8_SETIT; Uncharacterized protein | ||||
STRING | Si032741m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32640.1 | 2e-17 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.2G277500.5.p |