PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G277500.1.p | ||||||||
Common Name | SETIT_032741mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 29419.4 Da PI: 7.2689 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 109 | 154 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N +f Lr +P+ +++Ka+ L A YI +L Seita.2G277500.1.p 109 NHVEAERHRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 154 899***********************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.627 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-15 | 107 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.66E-11 | 108 | 159 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.4E-15 | 109 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-9 | 109 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-10 | 111 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MADMDELLSP CPSFSPPLTP FFLSHAGHPV IEFASYEVPE QWMLDDGDNL WPVGCSLSPH 60 SELSAPPPPP QPAPPPQQQE PIVTAPAQRP GKRRGRKPGP RRANGPTVNH VEAERHRREK 120 LNRRFCDLRA AVPTVSRMDK ASLLADAAAY IAELRARVAR LEAESRRAAA ARWEPAVVSC 180 GTQGADETVV EVRMLGPDAA AVRATSAGTH AAARLMGALR SLELHVQHAC VTRVHGLTVQ 240 DVVVDVPASL QDDGGGGLRA ALLQVLQGSA PASPSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-19 | 108 | 164 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 5e-19 | 108 | 164 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 5e-19 | 108 | 164 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 5e-19 | 108 | 164 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 5e-19 | 108 | 164 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 5e-19 | 108 | 164 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 5e-19 | 108 | 164 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 5e-19 | 108 | 164 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G277500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006525 | 2e-80 | AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03. | |||
GenBank | AP007254 | 2e-80 | AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08. | |||
GenBank | AP014965 | 2e-80 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 2e-80 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957381.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | A0A368Q3D3 | 0.0 | A0A368Q3D3_SETIT; Uncharacterized protein | ||||
STRING | Si032741m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 2e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G277500.1.p |