PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G269400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 281aa    MW: 30968.4 Da    PI: 6.7038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G269400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09121168455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Seita.2G269400.1.p 121 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 168
                         8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-17115184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.90E-11115172No hitNo description
PROSITE profilePS5088815.542117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-17117182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-7121168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MANFSHLSHQ HMEHGLANAS HGTPSFLFCH GTAPADSSSL ETSSGVLDTP PRGTASEDKK  60
IRKTREDCAS LSSAQSKDSN SKESTKKRGG KRERSSKEVD EEEEPKGYIH VRARRGQATD  120
SHSLAERVRR ERISERMRML QALVPGCDKV TGKALILDEI INYVQSLQNQ VEFLSMRIAS  180
LSPVLYGFGM DSDAFSDHTQ KMEGMLHHEA LAMPTSVMNR APSQAIMDTN TSNSSPSYEL  240
HGDGSANITF PQDSGSYMVQ EPRQELFNQV AFSNHMCSFQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G269400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855810.0BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957313.10.0transcription factor bHLH137
TrEMBLA0A368Q3K60.0A0A368Q3K6_SETIT; Uncharacterized protein
STRINGPavir.Ba01554.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-37bHLH family protein