PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G242400.1.p

Common Name

LOC101765607, SETIT_030774mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 274aa MW: 28019.4 Da PI: 9.4911

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G242400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.6e-38	48	106	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss Seita.2G242400.1.p 48 AGDPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSSS 106 5679**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	49	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	50	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-32	51	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MQEPGRRPAP PFAGVDLRRP KGYPAPAARA AEEPASASSA SAQAQPPAGD PCPRCESRDT 60 KFCYYNNYNT SQPRHFCKSC RRYWTKGGSL RNVPVGGGTR KSSSSSSASS SSLAAAPKST 120 KRSKNSKRRR VAPAPDPVPA TEASATTTRV ANNAPVPAPS TVAAAMVVAT GKPTASKPAP 180 PVAAAEKTTA PEPAATVAAM DEKLTAPPAA VGCFTSEPST APGLGLADVG CGGGKELPPD 240 PNHFEWPSGC DLGSYWSTGV FADTDPALFL NLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G242400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582404	2e-77	KC582404.1 Sorghum bicolor dof7 protein (dof7) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957110.1	0.0	dof zinc finger protein MNB1A
TrEMBL	K3ZVZ3	0.0	K3ZVZ3_SETIT; Uncharacterized protein
STRING	Si030774m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-28	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Seita.2G242400.1.p
Entrez Gene	101765607