PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G193200.2.p
Common NameLOC101784399, SETIT_030640mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 304aa    MW: 32897.2 Da    PI: 4.3709
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G193200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-1991146256
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r+++++t+eq++eLe  Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  Seita.2G193200.2.p  91 RTKRRLTAEQVRELELSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 146
                         77889**************98**********************************9 PP
2HD-ZIP_I/II117.85.9e-3892183292
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++L++a+d+l + +++L +++++Lr+++
  Seita.2G193200.2.p  92 TKRRLTAEQVRELELSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDRLRAAHDELLAGRDALLADNDRLRSQV 182
                         69****************9999******************************************************************998 PP

         HD-ZIP_I/II  92 k 92 
                          
  Seita.2G193200.2.p 183 I 183
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-1881150IPR009057Homeodomain-like
PROSITE profilePS5007117.79987148IPR001356Homeobox domain
SMARTSM003896.7E-1689152IPR001356Homeobox domain
PfamPF000464.6E-1691146IPR001356Homeobox domain
CDDcd000861.67E-1491149No hitNo description
Gene3DG3DSA:1.10.10.608.7E-1997147IPR009057Homeodomain-like
PRINTSPR000313.2E-6119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000313.2E-6128144IPR000047Helix-turn-helix motif
PfamPF021836.5E-14148190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDYGRNMISS AVPFRAAGEG GGQVFLFGGG GGGGEFLRGA PVVGAGAAGG GWRKRPFQLA  60
AHEELQLQLE LGDDELAGFD YELNGGGAQE RTKRRLTAEQ VRELELSFEE EKRKLEPERK  120
SELARRLGIA PRQVAVWFQN RRARWKAKQL EQDFDRLRAA HDELLAGRDA LLADNDRLRS  180
QVITLTEKLQ AKEESSAPDP EEQTVAALRE GAYGTLEQDQ LCIQPATGGA APAPAVGYCY  240
TGGDSDSPES YLAGARSPPS SSEDDCGGGD GDAGPFFLPD PEEDGVQLNN WAWLWNEQQY  300
NIA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G193200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568501e-109AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959426.10.0homeobox-leucine zipper protein HOX25
SwissprotA3BYC18e-77HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLK3ZVK90.0K3ZVK9_SETIT; Uncharacterized protein
STRINGSi030640m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-32homeobox 1