PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G179800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 260aa MW: 27680 Da PI: 9.7048 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.4 | 1.3e-27 | 121 | 180 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +Dg++WrKYGqKe+ g+++pr+YYrCt++ gC ++k+v+r++edp++++++Y+geH++ Seita.2G179800.2.p 121 NDGHSWRKYGQKEILGAKNPRGYYRCTHRhsqGCLATKQVQRTDEDPTLFDVIYHGEHTC 180 7***************************98999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.033 | 115 | 178 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.7E-27 | 117 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-39 | 120 | 182 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-24 | 120 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 121 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MARSMESVDG NGGGLVVTEL SHIKELVRQL EVHLGGSHDL CRHLTTQIFS ITERSISIIT 60 SSSLDAGAGG RKRPASPLSA TPTSDVTDGP FKNAKKRKVM EKRKHQVRVS SGSAGGGAAE 120 NDGHSWRKYG QKEILGAKNP RGYYRCTHRH SQGCLATKQV QRTDEDPTLF DVIYHGEHTC 180 VQRPTAAAAG QPEHNPEANG LLQSLAAGLT VKTEGLPALA ADPQGRGAAA PFYLSSSTPA 240 TRCRRCPPWT ASTSSSTWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-21 | 121 | 180 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00112 | ampDAP | Transfer from AT2G46400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G179800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058625 | 1e-124 | KU058625.1 UNVERIFIED: Panicum miliaceum WRKY10-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956613.1 | 1e-163 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A368Q0N6 | 0.0 | A0A368Q0N6_SETIT; Uncharacterized protein | ||||
STRING | Si030528m | 1e-163 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 3e-33 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G179800.2.p |