PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G179800.1.p
Common NameLOC101762911, SETIT_030528mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 325aa    MW: 34346.2 Da    PI: 6.7015
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G179800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.81.9e-27121180258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         +Dg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp++++++Y+geH++
  Seita.2G179800.1.p 121 NDGHSWRKYGQKEILGAKNPRGYYRCTHRhsqGCLATKQVQRTDEDPTLFDVIYHGEHTC 180
                         7***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.033115178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-27117181IPR003657WRKY domain
SuperFamilySSF1182903.14E-24120180IPR003657WRKY domain
SMARTSM007742.1E-39120182IPR003657WRKY domain
PfamPF031062.3E-26121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MARSMESVDG NGGGLVVTEL SHIKELVRQL EVHLGGSHDL CRHLTTQIFS ITERSISIIT  60
SSSLDAGAGG RKRPASPLSA TPTSDVTDGP FKNAKKRKVM EKRKHQVRVS SGSAGGGAAE  120
NDGHSWRKYG QKEILGAKNP RGYYRCTHRH SQGCLATKQV QRTDEDPTLF DVIYHGEHTC  180
VQRPTAAAAG QPEHNPEANG LLQSLAAGLT VKTEGLPALA ADPQGRGAAA PFYLSSSTPA  240
SGCLAAAERS PFSTSENWGV SPATSDSNNH VAASYLPFED AEWRGHNELQ EVVSALVAAS  300
ALPPLPAVDG FDEFLDLDIA SFLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-22121180968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G179800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586250.0KU058625.1 UNVERIFIED: Panicum miliaceum WRKY10-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956613.10.0probable WRKY transcription factor 70
TrEMBLK3ZV970.0K3ZV97_SETIT; Uncharacterized protein
STRINGSi030528m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-33WRKY DNA-binding protein 46