PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G179700.1.p | ||||||||
Common Name | LOC101762507, SETIT_030531mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 324aa MW: 33866.6 Da PI: 5.8088 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.5 | 5.6e-28 | 121 | 180 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDg++WrKYGqKe+ g+++prsYYrCt++ gC ++k+v+r++edp++++++Y g H++ Seita.2G179700.1.p 121 DDGHSWRKYGQKEILGAKYPRSYYRCTHRhsqGCAATKQVQRADEDPTLFDVIYLGAHTC 180 8***************************98999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-27 | 117 | 181 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-25 | 119 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-40 | 120 | 182 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.505 | 121 | 178 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.5E-27 | 121 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MASVVDGNGG GGGGGRVVME LSHIKDLVRQ LEGHLGGGSQ LQAQEVCRSL ASQISSLTER 60 SITLITSYYC LDAGRKRSAA ASLLSDVSDA PFKTTKKRKT TEKVKNQVRV SSAAGGDIPA 120 DDGHSWRKYG QKEILGAKYP RSYYRCTHRH SQGCAATKQV QRADEDPTLF DVIYLGAHTC 180 VQSGAVAAAG EAATATQQPP EHNPNAHSLL QSLSSSLTVK TEGLAAAPEP PQGWVATTPF 240 CLSSTPASGC LQAPAELSPF SAPSTTSENW GVSPATSDSN QHAAVSLPPF EVVAGDVEFE 300 FGEVVSALVG IPDDDFDISS FFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 7e-23 | 121 | 180 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G179700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956612.1 | 0.0 | probable WRKY transcription factor 30 | ||||
TrEMBL | K3ZVA0 | 0.0 | K3ZVA0_SETIT; Uncharacterized protein | ||||
STRING | Si030531m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 4e-31 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G179700.1.p |
Entrez Gene | 101762507 |