PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G175200.1.p
Common NameSETIT_028710mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 1299aa    MW: 146787 Da    PI: 7.427
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G175200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY811.2e-2510381098259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                          dDg++WrKYGqKe+ gs++pr+Y+rCt++   gC+++k+v+r++ dp+++ + Y geH+++
  Seita.2G175200.1.p 1038 DDGHSWRKYGQKEIPGSKYPRAYFRCTHRnsiGCNATKQVQRTDGDPNLFAVRYYGEHTCD 1098
                          7***************************99999**************************96 PP
2WRKY56.65.2e-1811531213259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                          dDgy W+ Y + ++ g+++prsYY C  +   gC ++k+v+r++ dp v++++Y+geH+++
  Seita.2G175200.1.p 1153 DDGYFWKEYVREDILGAKYPRSYYHCVCRhteGCGATKQVQRTDADPLVFDVIYNGEHTCK 1213
                          7*************************9777789**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.104.1E-1568100IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525401.67E-50190458IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009316.0E-48203484IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3008.2E-13216373IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.6E-12224239No hitNo description
PRINTSPR003641.6E-12296310No hitNo description
PRINTSPR003641.6E-12393407No hitNo description
SuperFamilySSF520581.84E-18556920IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.1E-15559848IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.6E-12695711No hitNo description
Gene3DG3DSA:2.20.25.801.6E-2410301098IPR003657WRKY domain
PROSITE profilePS5081122.43510321100IPR003657WRKY domain
SuperFamilySSF1182901.24E-2310371099IPR003657WRKY domain
SMARTSM007743.0E-3410371099IPR003657WRKY domain
PfamPF031066.5E-2510381098IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-1811441214IPR003657WRKY domain
SuperFamilySSF1182901.12E-1611481214IPR003657WRKY domain
SMARTSM007742.5E-2011521214IPR003657WRKY domain
PROSITE profilePS5081118.211531210IPR003657WRKY domain
PfamPF031066.3E-1911531213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1299 aa     Download sequence    Send to blast
MLFDLTDAFT FKLLGLQEIS SMEDQTRPLD GTIWKLPGKL SRLLCHGCIL PKGVENEIPL  60
IKHDLEEILA ILSNLDDDHA MMVRCWRKEV RELSYDIEDF INQYEHAKAG SWTGSIPRRK  120
IIQRHNSRTT LYRLREKLRH RLWIANKIRE FSVRSQEVLQ RHSMYNLNSI AGSSSRRCAG  180
AHFTSSHPTP CWDGNTPIGI SATMDKLEER LMKMYDEGHQ KLKVVSIVGF GGIGKTTLAN  240
ELYRKLGRQF ECRAFLRTSQ KPDMRRILIS MLSQVRPQQS PDNWTVHSLI STIRTHLQDK  300
RYFVIVEDLW ATSTWDILKC ALPDDSCCSR ILITTEIEDL ALQSCGYDPN YIFKLNPLGE  360
DDSRKLFFSS VFGPQQECPP EHREVYCDII RKCGGLPLAI VSIASIFAGQ LNVKEQMDYL  420
NKSLGCSLIT NATLEGIKQV IDLSYNNLPQ HLKACILYTG LYEEDIIIWR DDLVNEWIAE  480
GFICATGGQD KQEISRAYFD ELVGRKMIQP VHTNDNGEVL SCVVHYMVLN LIVTYKSMEE  540
NFITVVHHSQ ANSTLADKVR RLSLHFGNAE DVIPPSNMRL SQVRTLVYFG VCRCMPYILQ  600
FHLLQVLILH FWGDKDNISL DLTRISELFR LRYLMVSSNV TLDLRTQMHG LQYLETLKID  660
ARVRAVPSDI VHLSGLLNLS LPTQTNLPSR MGHMTSLRTL EYFDLSTNTM ENVQSLITLS  720
NLRELQLTCS TVQPENLNNK MQFLLNSIGR LSNLTSLNLV PRTSSCANSL DDAGAASITV  780
SDSISSMPTP TLLQSLEVSP RICIFLCLPK WIGQLCKLCT LKVGVRKLAR NDIDVLRGMP  840
LLAVLSLYVH TKPASRIVIG KTGFPVIRYF KFKCCDPLLK FEEDAMPHLR KLKLVFNAHS  900
ADLQSTIPVG IDFLSELKEF SVKIGGAGPD KSHRRAAELA FREAIMVHGR CQRVNVRCVQ  960
HIIGGKEGQS CITTHDDHDS YEHDEIMPDN SGQEVLCAVK EAGTIPLPGK KEGNNDADNR  1020
KRRKTLVKDI LTSSSDGDDG HSWRKYGQKE IPGSKYPRAY FRCTHRNSIG CNATKQVQRT  1080
DGDPNLFAVR YYGEHTCDYR SETTVRVEME QSSITELGVN SVNPSTSSAC STSSVSSRRS  1140
MIRGNVKTSK PDDDGYFWKE YVREDILGAK YPRSYYHCVC RHTEGCGATK QVQRTDADPL  1200
VFDVIYNGEH TCKQTAHFTD ENKSLSVPLD PPTPGLSEML SAEDTAEISF DKFRGLFNND  1260
CPIKGKIDVD TPWGNMKLPI SKEGGTTRIK EEDDGNDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-368353358496Disease resistance RPP13-like protein 4
6j5t_F1e-368353358496Disease resistance RPP13-like protein 4
6j5t_G1e-368353358496Disease resistance RPP13-like protein 4
6j5t_L1e-368353358496Disease resistance RPP13-like protein 4
6j5t_O1e-368353358496Disease resistance RPP13-like protein 4
6j5u_A1e-368353358496Disease resistance RPP13-like protein 4
6j5v_A1e-368353358496Disease resistance RPP13-like protein 4
6j5w_A1e-368353358496Disease resistance RPP13-like protein 4
6j6i_C1e-368353358496Disease resistance RPP13-like protein 4
6j6i_F1e-368353358496Disease resistance RPP13-like protein 4
6j6i_G1e-368353358496Disease resistance RPP13-like protein 4
6j6i_L1e-368353358496Disease resistance RPP13-like protein 4
6j6i_O1e-368353358496Disease resistance RPP13-like protein 4
6s2p_N3e-371905313339NRC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G175200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956573.10.0putative disease resistance RPP13-like protein 2 isoform X1
TrEMBLA0A368PZX70.0A0A368PZX7_SETIT; Uncharacterized protein
STRINGSi028710m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-24WRKY DNA-binding protein 46