PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G140900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 335aa    MW: 35160.8 Da    PI: 8.3605
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G140900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73e-192570147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEde l ++v+++G ++W++I+r ++ gR++k+c++rw + 
  Seita.2G140900.1.p 25 KGPWSPEEDEALQRLVARHGARNWSLISRSIP-GRSGKSCRLRWCNQ 70
                        79******************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5972075IPR017930Myb domain
SuperFamilySSF466892.23E-2222100IPR009057Homeodomain-like
SMARTSM007178.3E-172473IPR001005SANT/Myb domain
PfamPF002492.1E-182570IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-212570IPR009057Homeodomain-like
CDDcd001674.13E-162769No hitNo description
Gene3DG3DSA:1.10.10.601.9E-67198IPR009057Homeodomain-like
SMARTSM007173476311IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MASSSSSPSC RAGGAGGKPD VDRIKGPWSP EEDEALQRLV ARHGARNWSL ISRSIPGRSG  60
KSCRLRWCNQ LSPQVEHRPF TPDEDDTILR AHARFGNKGS TTPPLVPVAV LPGPAAAADA  120
DDERPLKRTS SDGHPGLCFS PGSPSGSDLS DSSHHSLPSV MPSAAPAVTS QQQQHVYRPV  180
PRAGGVVVLP PPLAPRPPSP PPQAPPPPAT SLSLSLSLPG LDQQADPSPS PPPVQMQQQQ  240
PAPSQMPPPP PPPPTQPSLP FQLEPPAMNL ASPRPPPPPQ SPAPFSAEFL SMMQEMIRIE  300
VRNYMSGSGL DPRADAGAAV HAVSKRMMGM AKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2124107386MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-2124107386C-Myb DNA-Binding Domain
1msf_C1e-2124107386C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G140900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794252e-96HF679425.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB19 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699597.21e-150LOW QUALITY PROTEIN: transcription factor MYB44-like
TrEMBLA0A368PYI30.0A0A368PYI3_SETIT; Uncharacterized protein
STRINGSi032789m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-43myb domain protein 73