PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G138200.1.p
Common NameSETIT_032391mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 133aa    MW: 14785.1 Da    PI: 8.8431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G138200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20860156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr+++ +g+++AeIrd s    +  r++lg+f+taeeAa+a+++ + +++g+
  Seita.2G138200.1.p  8 TKYRGVRRRP-WGKYAAEIRDSSR---HgVRIWLGTFDTAEEAARAYDRSAYSMRGA 60
                        69********.**********432...25*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-14859IPR001471AP2/ERF domain
CDDcd000181.13E-28869No hitNo description
SMARTSM003802.2E-33973IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31968IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-23968IPR016177DNA-binding domain
PROSITE profilePS5103223.815967IPR001471AP2/ERF domain
PRINTSPR003674.9E-121021IPR001471AP2/ERF domain
PRINTSPR003674.9E-123349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0010186Biological Processpositive regulation of cellular defense response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090332Biological Processstomatal closure
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDGEGEPTKY RGVRRRPWGK YAAEIRDSSR HGVRIWLGTF DTAEEAARAY DRSAYSMRGA  60
NAVLNFPEDA RVYAAAARGS GSSSSSSRQQ QQQQQQPGGR DVIEFEYLDD EVLQEMLRNH  120
DDGGPSSARK KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-35611211114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00029PBMTransfer from AT5G43410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G138200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275191e-129KJ727519.1 Zea mays clone pUT5378 AP2-EREBP transcription factor (EREB189) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956267.17e-93ethylene-responsive transcription factor ERF096
SwissprotQ9LSX03e-35ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A368PZE82e-91A0A368PZE8_SETIT; Uncharacterized protein
STRINGSi032391m2e-91(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.14e-36ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]