PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G037900.1.p | ||||||||
Common Name | SETIT_030811mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | YABBY | ||||||||
Protein Properties | Length: 168aa MW: 18678.1 Da PI: 9.0345 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 231.3 | 2.4e-71 | 3 | 157 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 +++se+vCyv+Cn+Cntil+v+vP+++++++vtv+CGhCt++ls++l+ ++q++++ + +++ +++++ +n+ s++ ++++ + Seita.2G037900.1.p 3 GQFASEHVCYVNCNYCNTILVVNVPNNCSYNIVTVKCGHCTMVLSMDLSPFHQARTVPES-------QVVPNRGFQYNNFGSYEAASRNLR 86 5789****************************************************9996.......7999************99998877 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 t+ s++ +s+n+ + vpp +rPPekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWah+P++hfgl Seita.2G037900.1.p 87 TQ-SMYPMSNNQPQ----VPP-VRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157 65.66677877755....445.8****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.1E-62 | 6 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.44E-8 | 98 | 151 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.8E-6 | 105 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048833 | Biological Process | specification of floral organ number | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSGQFASEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVKCG HCTMVLSMDL SPFHQARTVP 60 ESQVVPNRGF QYNNFGSYEA ASRNLRTQSM YPMSNNQPQV PPVRPPEKRQ RVPSAYNRFI 120 KEEIQRIKTS NPEISHREAF SAAAKNWAHL PRLHFGLSVA DGGGGSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G037900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963149 | 1e-168 | EU963149.1 Zea mays clone 258350 protein YABBY mRNA, complete cds. | |||
GenBank | EU970658 | 1e-168 | EU970658.1 Zea mays clone 348580 protein YABBY mRNA, complete cds. | |||
GenBank | KJ727990 | 1e-168 | KJ727990.1 Zea mays clone pUT6110 C2C2-YABBY transcription factor (YAB3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955497.1 | 1e-123 | protein YABBY 1 | ||||
Swissprot | Q7XIM7 | 2e-99 | YAB1_ORYSJ; Protein YABBY 1 | ||||
TrEMBL | A0A368PX27 | 1e-122 | A0A368PX27_SETIT; Uncharacterized protein | ||||
TrEMBL | K3ZW30 | 1e-122 | K3ZW30_SETIT; Uncharacterized protein | ||||
STRING | Si030811m | 1e-122 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 3e-42 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G037900.1.p |