PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G014000.1.p
Common NameLOC101757359, SETIT_030145mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 384aa    MW: 43320.2 Da    PI: 7.299
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G014000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.22.8e-2080170182
            trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                         rWt ++v++L+ a+++++ + ++++        ++k++W+ vs +m er+f++sp+qC++k+++lnkry++++e+ +++ +se  ++ +++
  Seita.2G014000.1.p  80 RWTSDMVKLLVSAVSYIDPDHSTSSgrrkhtmlKMKGKWRLVSLAMTERKFTVSPQQCEDKFNDLNKRYRRLTEILGQGmASEIIKKPVLL 170
                         8****************999999877778888899*****************************************998555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-1778198No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEGNLSPQAL IPSGAPFDLG QPLHFAAQPQ AVQVHQGVIA ATAMNKMQEF ENVVEASLRE  60
EEGADDGKAA VSASQWPRVR WTSDMVKLLV SAVSYIDPDH STSSGRRKHT MLKMKGKWRL  120
VSLAMTERKF TVSPQQCEDK FNDLNKRYRR LTEILGQGMA SEIIKKPVLL EQVSLSGKLR  180
EEAKKHLRSK HLHYEEMCSY HNHNRSCLPD DPALQRSLHM ALRSLDEQGK KCSFGYGDED  240
DPMLVSDGDD EDDGFNVDHR HSGVHGTKKQ KHDHEGGHCG SDLSKAVAVG ANRMFPKRIG  300
GSAAEKNPSG MNAIQVERER LKIKGEMLKL EQSHLKWLKS SEEEDRELQK MKLENERMQL  360
ENEQLEQELK LKEIEMGIKP KRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G014000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955374.10.0uncharacterized protein LOC101757359
RefseqXP_022679624.10.0uncharacterized protein LOC101757359
TrEMBLK3ZU640.0K3ZU64_SETIT; Uncharacterized protein
STRINGSi030145m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127742636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-56sequence-specific DNA binding transcription factors