PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G003100.1.p
Common NameLOC101773985, SETIT_030377mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 346aa    MW: 36151.4 Da    PI: 6.3665
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G003100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.2e-33148205259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCt ++C vkk+vers++dp+vv++tYeg+H h+
  Seita.2G003100.1.p 148 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCAVKKRVERSSDDPSVVITTYEGQHCHH 205
                         8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-33132206IPR003657WRKY domain
SuperFamilySSF1182903.79E-28139205IPR003657WRKY domain
PROSITE profilePS5081129.712142207IPR003657WRKY domain
SMARTSM007748.3E-39147206IPR003657WRKY domain
PfamPF031064.5E-26148205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAGEAAGVVG AGEWPFSADA YADSSAIFAE LGCWAAGLDD GAGGELLLPL PPPLDPPEDK  60
DDILLQPPSL SEPAGSMVSV DGGASSSSTD DGKPAAAATE AASKPAPGKT MTTTSNSNNN  120
KSSTGQNKKR ARQPRFAFMT KSDVDHLEDG YRWRKYGQKA VKNSPFPRSY YRCTNSKCAV  180
KKRVERSSDD PSVVITTYEG QHCHHTVTFP RAALAAGHMA AFEFSTAAAA HHHLYDHRLP  240
PLQLPTAAVL NNNNDHPLAC RPAASAAMSP SSLLLQHCNQ DLLATPCYDP TTTLSSAMTM  300
PALASVVVST PKSSSPTTAE SPASAPVAVD NGLLDDMVPP AMRHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25137204774Probable WRKY transcription factor 4
2lex_A1e-25137204774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G003100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409581e-79AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence.
GenBankAY3418581e-79AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955332.10.0probable WRKY transcription factor 32
TrEMBLK3ZUU60.0K3ZUU6_SETIT; Uncharacterized protein
STRINGSi030377m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-52WRKY DNA-binding protein 57