PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G350600.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 399aa MW: 40017.4 Da PI: 5.4108

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G350600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.3e-12	202	247	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Seita.1G350600.1.p 202 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 247 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-17	195	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.36E-13	195	251	No hit	No description
PROSITE profile	PS50888	17.39	197	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	199	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-9	202	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	203	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MQPSGREMQG GGGGQDDFFD QMLSTLPTAW SELGSGKSPW ELPAGASEDP AAFDESALLA 60 SRLRHHQIGG DKPIMLHLSD LHGLAGGEDA GAAGFLPLPL FTDRAREDMD AAFKSPNAAG 120 GEQALYNGFG AAGMHGAAAA VQPPFGQGGS MPAQSFGGGA AAGGGGSAPT GAPAAGAPSG 180 GGAAPPRQQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII 240 DYVKFLQLQV KVLSMSRLGG AAGVGPLVAN MSSEGNGNGN GTSDSGDGNA ANGGNNGENG 300 GSSLKVTEQQ VARLMEEDMG TAMQYLQGKG LCLMPISLAS AISSATSSSL LSRPSIGSMG 360 GARGLGHEGS NPASPPLMNG AGGDDSRTGK DAGAGSKQ*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MQPSGREMQG GGGGQDDFFD QMLSTLPTAW SELGSGKSPW ELPAGASEDP AAFDESALLA  60
SRLRHHQIGG DKPIMLHLSD LHGLAGGEDA GAAGFLPLPL FTDRAREDMD AAFKSPNAAG  120
GEQALYNGFG AAGMHGAAAA VQPPFGQGGS MPAQSFGGGA AAGGGGSAPT GAPAAGAPSG  180
GGAAPPRQQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII  240
DYVKFLQLQV KVLSMSRLGG AAGVGPLVAN MSSEGNGNGN GTSDSGDGNA ANGGNNGENG  300
GSSLKVTEQQ VARLMEEDMG TAMQYLQGKG LCLMPISLAS AISSATSSSL LSRPSIGSMG  360
GARGLGHEGS NPASPPLMNG AGGDDSRTGK DAGAGSKQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	211	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G350600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954215.1	0.0	transcription factor bHLH82
Swissprot	Q9ZUG9	2e-74	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A368PSW5	0.0	A0A368PSW5_SETIT; Uncharacterized protein
STRING	Pavir.Ab03158.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-34	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Seita.1G350600.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]