PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G328500.1.p | ||||||||
Common Name | SETIT_017524mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 25442.5 Da PI: 5.2233 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.4 | 1.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl ++s Seita.1G328500.1.p 9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 59 79*********************************************9986 PP | |||||||
2 | K-box | 58 | 4.2e-20 | 90 | 171 | 18 | 99 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++a+L++++ + +R++ Ge+Le Ls+ eLqqLe++Le +l ++ ++K++ +leqi+elq+k +l een++Lr+++ Seita.1G328500.1.p 90 HSKYANLNEQLTEASLRLRQMRGEELEGLSVDELQQLEKNLEAGLHRVLQTKDQQFLEQISELQRKSSQLAEENMQLRNQVS 171 345566666666666889************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.623 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.06E-39 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 8.0E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-30 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.22 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.8E-18 | 91 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSQFASS 60 SMNEIIDKYN THSKNLGKAE QPSLDLNLEH SKYANLNEQL TEASLRLRQM RGEELEGLSV 120 DELQQLEKNL EAGLHRVLQT KDQQFLEQIS ELQRKSSQLA EENMQLRNQV SQIPPAGKQA 180 VAETENVIAE DGQSSESVMT ALHSGSSQDN DDGSDVSLKL GLPCVAWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-20 | 1 | 73 | 1 | 73 | MEF2C |
5f28_B | 4e-20 | 1 | 73 | 1 | 73 | MEF2C |
5f28_C | 4e-20 | 1 | 73 | 1 | 73 | MEF2C |
5f28_D | 4e-20 | 1 | 73 | 1 | 73 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G328500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035420 | 0.0 | BT035420.1 Zea mays full-length cDNA clone ZM_BFb0060F04 mRNA, complete cds. | |||
GenBank | KJ726923 | 0.0 | KJ726923.1 Zea mays clone pUT3468 MADS transcription factor (MADS73) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953998.1 | 1e-166 | MADS-box transcription factor 22 | ||||
Swissprot | Q9XJ66 | 1e-147 | MAD22_ORYSJ; MADS-box transcription factor 22 | ||||
TrEMBL | A0A368PU14 | 1e-164 | A0A368PU14_SETIT; Uncharacterized protein | ||||
TrEMBL | K3YTC9 | 1e-163 | K3YTC9_SETIT; Uncharacterized protein | ||||
STRING | Si017524m | 1e-164 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-77 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G328500.1.p |
Publications ? help Back to Top | |||
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