PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G327200.1.p
Common NameLOC101760738, SETIT_017701mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 344aa    MW: 36211.1 Da    PI: 7.6977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G327200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13128179155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  Seita.1G327200.1.p 128 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 179
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.71E-13126183No hitNo description
PROSITE profilePS5088815.561127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-17127199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-11128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-14128191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-10133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MALEAVVFPK EHLACTAKAG VAAHLASLGC GFDIDDLEEK GGVVLQEEAA AAALPLGASA  60
ATAWDAALCP CSVAPGAVEE CWDAQRRLSA SPPPVPVAPG RGKAAASAAR RRRRRPKAVK  120
NTEEMESQRR NHIAVERNRR RQMNEYLAVL RSVMPPSYAQ RGDQASIVAG AINFVKELEQ  180
LLQSLEAQKR RAGSCTEPQP AAAPFAGFFT FPQYSTGATG AVGSSDSSSS AGGDQSGGGG  240
CAGARRGVAD IEVAVAESHA NVKVLAPRRP RQLLRMVVAL QCLGLTVLHL NVTTTADHMA  300
FYSFSLKMED ECRLSSVDDI AAAVNEIVAK VFDERVSQLL AAY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114RRRRRR
2129139RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G327200.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605120.0BT060512.1 Zea mays full-length cDNA clone ZM_BFb0009D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953984.10.0transcription factor bHLH94
TrEMBLK3YTV50.0K3YTV5_SETIT; Uncharacterized protein
STRINGSi017701m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-50bHLH family protein