PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G293000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 298aa    MW: 30873.5 Da    PI: 5.8287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G293000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10213254955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  Seita.1G293000.1.p 213 AKNRRERISERLRTLQELVPNG-----TKVDMVTMLEKAISYVKFLQ 254
                         69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.472204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12206262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-13206258No hitNo description
SuperFamilySSF474599.16E-14206264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-12210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-7213254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MALVREHAAY GGFDGAEATA FEALVYGHDN ALLGFDAAAL FGGGTSSASA AYVAGGRNAW  60
ASTGSASMLA FDRATAAAAA AAAVGEEEEE ECDAWIDAMD QSYAAAAAAP EARHAPTTAS  120
VGFDAATGCF TLTERASPSG DAGRPFGLLF PGTSSSVGSP ERAAPARATR KRTYVDALPQ  180
AVNAKKPCGA GRKTSKAKSA PTVPTKDPQS LAAKNRRERI SERLRTLQEL VPNGTKVDMV  240
TMLEKAISYV KFLQLQVKVL ATDEFWPAQG GKAPEISQVR EALDAILSSA SQREQLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G293000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096621e-109AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953650.10.0putative transcription factor bHLH086
TrEMBLA0A368PQF10.0A0A368PQF1_SETIT; Uncharacterized protein
STRINGSb04g030230.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-53ROOT HAIR DEFECTIVE6