PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G292900.1.p
Common NameSETIT_019575mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 296aa    MW: 30469.8 Da    PI: 4.9106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G292900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10211252955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  Seita.1G292900.1.p 211 AKNRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 252
                         69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-12203260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-12204256No hitNo description
SuperFamilySSF474591.96E-13206262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-12208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-7211252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MALVREHGGY GGFDGADAFD ALGYGHDAML GFDAASLFGG GGGSYAAAGA GCVAADGGNV  60
VWPTGARAAA SVLAFDRATA AAAVSGEEED DDEECDAWID ATDQSYGDAA APEASHARTP  120
TVSVGFDAST GCFTLTERAA SSGGAGRAFG LLFPSTAAAP ARASQKRTYV GVEPPAAVSP  180
NKKHCGADRK ATSRAKSAPT IPTKDPQSLA AKNRRERISE RLRTLQELVP NGTKVDLVTM  240
LEKAISYVKF LQLQVKVLAT DEFWPAQGGK APEISQVREA LDAILSSASQ REQLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G292900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096621e-106AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679441.10.0transcription factor UNE12
TrEMBLK3YZ670.0K3YZ67_SETIT; Uncharacterized protein
STRINGSi019575m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.18e-55ROOT HAIR DEFECTIVE6