PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G284000.1.p
Common NameLOC101763829, SETIT_017095mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 475aa    MW: 49012.8 Da    PI: 6.2878
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G284000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30222280259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Seita.1G284000.1.p 222 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPTLLVITYNSEHNHP 280
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.684216282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-31218282IPR003657WRKY domain
SuperFamilySSF1182906.41E-26219282IPR003657WRKY domain
SMARTSM007742.5E-37221281IPR003657WRKY domain
PfamPF031061.3E-25223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MCDYFLQRME GDHRQASGDL TDVVRAGGAM QAGVADLSSA ATAGWQLPAA EPGAGLFPPP  60
QPSPSDGAGP SDDGFGDAFA GLSDAFGTGG NFRACSSGGA ADFFDFEAPV GGRGGGGALV  120
DTGGGGVVAR GMQMAPALSP REIRPYPVMM AGGDAVKLGV PTMMPGLAVG PPCAFDAVAG  180
MQMPSPHGGG IKRRKNQARK VVCIPAPAAS AGGRTTGEVV PSDLWAWRKY GQKPIKGSPY  240
PRGYYRCSSS KGCPARKQVE RSRTDPTLLV ITYNSEHNHP WPTQRNALAG STRSHHAKNS  300
KSNSSHNLQK PIVKAEPDQT ATAASATTAT AATSTTTTAT TSTASNSTPT TTTMAVKEEA  360
MVGSEMEKGT IDHGTSVALD HGDLMQQMFS QSYRPMIPEG GHHVDDFFAD LAELESDPMS  420
LIFPCGDPGR EKATTPKGLG ADPLFNMLDW GTMATNVVAT SAGSSFEQGE SGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23195283280Disease resistance protein RRS1
5w3x_D2e-23195283280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116GGRGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G284000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0619830.0BT061983.1 Zea mays full-length cDNA clone ZM_BFb0203F20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953547.10.0probable WRKY transcription factor 14
TrEMBLK3YS510.0K3YS51_SETIT; Uncharacterized protein
STRINGSi017095m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-60WRKY DNA-binding protein 35