PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G251600.1.p | ||||||||
Common Name | LOC101755314, SETIT_018146mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | YABBY | ||||||||
Protein Properties | Length: 257aa MW: 26896.7 Da PI: 8.0253 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 216.4 | 8.7e-67 | 21 | 214 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshl..deslkee.................lle 73 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+ + +a s+l ++sl + l++ Seita.1G251600.1.p 21 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlppAAPPAASQLsfGHSLLSPtsphglldefalqapsiLMD 111 578********************************************99866555556665511344444478889666666555553333 PP YABBY 74 elkveeenlksnvekeesastsvssekl...............senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdis 148 + + ++ ++ ++++ +++ e+++ p v+rPPekrqrvPsaynrfik+eiqrika+nPdi+ Seita.1G251600.1.p 112 QASANLSSATTGRSNSS----------CgsnlpaapmpaakppAVQQEPELAKSAPsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDIT 192 33333333333333333..........133334444478888766666677766555********************************** PP YABBY 149 hreafsaaaknWahfPkihfgl 170 hreafsaaaknWahfP+ihfgl Seita.1G251600.1.p 193 HREAFSAAAKNWAHFPHIHFGL 214 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.0E-70 | 22 | 214 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.23E-7 | 157 | 207 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-4 | 163 | 206 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MMSSSSSSSS AAFPLDHLAP SPTEQLCYVH CNCCDTILAV GVPCSSLFKT VTVRCGHCAN 60 LLSVNLRGLL LPPAAPPAAS QLSFGHSLLS PTSPHGLLDE FALQAPSILM DQASANLSSA 120 TTGRSNSSCG SNLPAAPMPA AKPPAVQQEP ELAKSAPSVN RPPEKRQRVP SAYNRFIKDE 180 IQRIKAGNPD ITHREAFSAA AKNWAHFPHI HFGLMPDQGL KKTFKAQDGA EDMLLKDGLY 240 AAAAAAAAAN MGITPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G251600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960773 | 0.0 | EU960773.1 Zea mays clone 228481 yabby15 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953265.1 | 0.0 | protein YABBY 4 | ||||
Swissprot | A2X7Q3 | 1e-128 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-128 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | K3YV50 | 0.0 | K3YV50_SETIT; Uncharacterized protein | ||||
STRING | Si018146m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 5e-63 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G251600.1.p |
Entrez Gene | 101755314 |
Publications ? help Back to Top | |||
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