PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G248300.1.p
Common NameLOC101777340, SETIT_019997mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 461aa    MW: 49022.9 Da    PI: 9.7705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G248300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19218268256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Seita.1G248300.1.p 218 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 268
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.08E-32217277No hitNo description
SMARTSM003801.1E-38218281IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23218276IPR016177DNA-binding domain
PROSITE profilePS5103223.024218275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32218276IPR001471AP2/ERF domain
PfamPF008472.7E-12219268IPR001471AP2/ERF domain
PRINTSPR003678.3E-11219230IPR001471AP2/ERF domain
PRINTSPR003678.3E-11241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEPADRGGGG RGRGWKGKGV SSGSAAGRQL APVLEDAPAA ALLRPLKKIR SPDRRLNRSL  60
SALSSAPPSP DSSSVSNPMS PPATSLPSTR HIFPFAYDPA PAASTASTAA AATAPRLMPL  120
MQYSSVYQQP LPPQQQQPLQ HQQMISFGGG QHQQPPPQFA AAASPLFPPQ LVAPEVQQQM  180
LLRYWSEALN LSPRGFRGGA VPPALFQQLL RAPGPPKLYR GVRQRHWGKW VAEIRLPRNR  240
TRLWLGTFDT AEDAAMAYDR EAFKLRGENA KLNFPDLFLG KGRVGGSGRT SASAAASCSS  300
SSSSAPPTPD DTNTKQAQHH HGEQPFNSEA KPLLPETEQA KNSEPEPNPQ LQPADHQGGD  360
GNAAMFKPSV TSSGGWGPAD EAWFSAWGPG SSVWDYDMDN AHGLFLQSRF ASEVTSMDYV  420
PSAPDVPVTP AAGTAMASAA SISLPSPPPP PRSPAYMWKD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19217275463ATERF1
3gcc_A1e-19217275463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G248300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953233.10.0ethylene-responsive transcription factor ERF053
TrEMBLK3Z0D40.0K3Z0D4_SETIT; Uncharacterized protein
STRINGSi019997m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-36ERF family protein