PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G205600.1.p
Common NameSETIT_017107mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family EIL
Protein Properties Length: 471aa    MW: 51087.7 Da    PI: 5.0092
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G205600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3352.21e-107623582290
                         XXXXXXXXXXXXXXXXXXXXXX..XXXXX.....XXXXXXX...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa....tgakksn...............ksneqarrkkmsraQDgiLkYMlkemevcnaqGfv 73 
                         +lk+rmwkdqmll++l++r     +   +a                          ++  + +rk+m raQDg+L++Mlk+me+cna+Gfv
  Seita.1G205600.1.p  62 DLKRRMWKDQMLLNKLEGRAGAFRAVGAEAglssR-----PlvlpgagaeglaeeeTPDVRCQRKAMLRAQDGVLRHMLKMMEACNARGFV 147
                         9******************9986544443334440.....2556666666666666999******************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--T CS
                EIN3  74 YgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfpl 164
                         Yg i+e g+p++g+sdsLr+WWk++v+fdr+gp+a++       +++ges l     s  h+l+++qD+tlgS+Lsal+qhc+ppqr+fpl
  Seita.1G205600.1.p 148 YGVIDEAGEPMSGSSDSLRGWWKDNVSFDRAGPMALT-------VPAGESPLG--IASCLHRLQDIQDSTLGSVLSALIQHCEPPQRSFPL 229
                         ***********************************98.......778999994..58999******************************* PP

                         TT--HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTT CS
                EIN3 165 ekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqee 254
                         e+g++pPWWPtG+e wwg++g ++++qg ppy+kphdlkkawk+s+L+avikhm+p+++++r+l++qsk+lq+kmsake+ +++++l+qee
  Seita.1G205600.1.p 230 ERGLAPPWWPTGQEVWWGAQGeVQAHQGVPPYRKPHDLKKAWKISLLSAVIKHMNPRFDQMRKLVWQSKRLQQKMSAKETEVWSKILRQEE 320
                         ******************************************************************************************* PP

                         T-S--XXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3 255 kecatvsahss..slrkqspkvtlsceqkedvegkkes 290
                          + ++++++ +   l +++ +  l++   +  +++k++
  Seita.1G205600.1.p 321 VLSRRLKTSLQitPLDNDDDDDGLEDVVGRAHDKRKRE 358
                         *****999955445555555555555555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.0E-11262320No hitNo description
Gene3DG3DSA:1.10.3180.105.1E-63195329IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.88E-55198322IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MNHGIHGRRH PFSEAAMEHD VAHGGGAGGV PAGEAFEAVL DQLEQEELSD SESGSESIEI  60
SDLKRRMWKD QMLLNKLEGR AGAFRAVGAE AGLSSRPLVL PGAGAEGLAE EETPDVRCQR  120
KAMLRAQDGV LRHMLKMMEA CNARGFVYGV IDEAGEPMSG SSDSLRGWWK DNVSFDRAGP  180
MALTVPAGES PLGIASCLHR LQDIQDSTLG SVLSALIQHC EPPQRSFPLE RGLAPPWWPT  240
GQEVWWGAQG EVQAHQGVPP YRKPHDLKKA WKISLLSAVI KHMNPRFDQM RKLVWQSKRL  300
QQKMSAKETE VWSKILRQEE VLSRRLKTSL QITPLDNDDD DDGLEDVVGR AHDKRKRELI  360
STSRDNSWSS GSGGSRGGSG ELAVMLPELA ALVAADDESR LSPIDELVKL YCSHAPADQG  420
GGGHPESGAV AVVPPVELDM FSAGVVPPDV PFDLIGSCSG LDDVFLLMLD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-481963261130Protein ETHYLENE INSENSITIVE 3
4zds_B1e-481963261130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G205600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269670.0KJ726967.1 Zea mays clone pUT3668 EIL transcription factor (EIL5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955019.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ55e-88EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLK3YS630.0K3YS63_SETIT; Uncharacterized protein
STRINGSi017107m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.13e-86EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]