PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G201000.1.p
Common NameLOC101782730, SETIT_017444mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 396aa    MW: 42286.6 Da    PI: 8.4447
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G201000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.35.3e-1565146286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +k  +++       ++pyfd+l+
  Seita.1G201000.1.p  65 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDVQCKNRIDTLKKKYKIEKSKRGS-------SWPYFDRLD 146
                         *************************************87889976333778**************99988886.......5******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2463148No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDDDGAASPS PSPSPSPSRS PSPLPVADPV TVAAAPPGHV AVAIPLRKPS PSSGGGGGGG  60
REDAWSDGAT STLIDAWGER FVALGRGSLR HPQWQEVAEV VSSRDGYSKP PKSDVQCKNR  120
IDTLKKKYKI EKSKRGSSWP YFDRLDDLLA PVHKPNSSSS SAAAAARSAP PMVPPRINFP  180
QRTRTPLQPS AGSKRRMPSP PPQASASSES SDGFPPETRS ALPNGKRQRV EEHTPAAAAN  240
GAESSDSRAQ GLRDLAQAIR RLGEVYERVE NAKREQEFRM ERERLDAARE LEDQRAQFFL  300
KMQMELTKAT GGGASAAAAP VAVPIPADGN GTRRTGMAAE VATSSNHRVR YRIKGSIHQH  360
AAQQPHYQNN ATGNGSDSDN KEAEEDAEDE EEESQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G201000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650910.0EU965091.1 Zea mays clone 283747 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952731.10.0trihelix transcription factor ASIL2
TrEMBLK3YT490.0K3YT49_SETIT; Uncharacterized protein
STRINGSi017444m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-32sequence-specific DNA binding transcription factors