PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G188000.1.p
Common NameSETIT_019157mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 282aa    MW: 29018.6 Da    PI: 9.9329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G188000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.4e-21128177255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         gy+GVr+++ +g+W+AeIrdp+    + +r++lg+f t+e+Aa+a++aa+++l+g
  Seita.1G188000.1.p 128 GYRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFVTPEDAARAYDAAALRLRG 177
                         8********.**********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.9E-36128191IPR001471AP2/ERF domain
PROSITE profilePS5103225.356128185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-32128186IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22128186IPR016177DNA-binding domain
PfamPF008478.8E-15128177IPR001471AP2/ERF domain
CDDcd000181.40E-21129187No hitNo description
PRINTSPR003674.5E-14129140IPR001471AP2/ERF domain
PRINTSPR003674.5E-14167187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRPPPSSTTP TAALRRDTEA AAIAAALAQV IAGGSSGTTL THLQKASTAP PLVMPLCSST  60
AVGNHHGHIG PPAYHGETSA HSVSASAVQD RTAPAQSLVP APTEAPMAST WPQGTEQGLL  120
APPAAPRGYR GVRRRPWGKW AAEIRDPRKA ARVWLGTFVT PEDAARAYDA AALRLRGSRA  180
KLNFPEDASS LRHLPATVGS WQPASGGDGA MDRPPFPKMV CSDNGRFMGS WNVGTSLASP  240
KAACSTAPVD ATLLCGSHVT GSRGTEDAGN GIEKCNSAKH S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-23129190668ATERF1
3gcc_A9e-23129190668ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G188000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056118e-62AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149588e-62AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126108e-62CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821609.11e-87ethylene-responsive transcription factor ERF095-like
TrEMBLK3YY070.0K3YY07_SETIT; Uncharacterized protein
STRINGSi019157m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-22ERF family protein