PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G186900.3.p | ||||||||
Common Name | LOC101766818, SETIT_017397mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 403aa MW: 45215.9 Da PI: 6.631 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.2 | 8.2e-22 | 87 | 183 | 1 | 84 |
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessst 78 +Wt ++v++L+ a++++++++ ++ ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++t ++ +++ Seita.1G186900.3.p 87 KWTSDMVKLLVSAVSYIDDDIDADHgtssgrkkhamlKRKGKWRLVSSAMTERGFPVSPQQCEDKFNDLNKRYKRLTEILGRGTaCQIVEK 177 7**************999999987555677788999899*******************************************954888888 PP trihelix 79 cpyfdq 84 ++++q Seita.1G186900.3.p 178 PALLEQ 183 777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-20 | 85 | 210 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MEGNLPPRAL IPGGAPFDLG QPFHFAAQPQ AAVQVHQGAF AAPAANQMQE PGNAVKASLS 60 DEEAAADGHH GRGKAAAAPA SQWHRVKWTS DMVKLLVSAV SYIDDDIDAD HGTSSGRKKH 120 AMLKRKGKWR LVSSAMTERG FPVSPQQCED KFNDLNKRYK RLTEILGRGT ACQIVEKPAL 180 LEQVSLSAKL KEEAKKHLNS KHLHYEEMCS YHNHNRHCLL DDPALQRSLR VALRSPDEQG 240 KKCSFGYDDE DDQMFLFDDD DDDDGFNDDL EASAEDHLHH RVHGNKKLKH DHEGGHCGSH 300 LSEVAAIDMN KMFAEGAGGS AAEKNLSGMN ATQIERERLK IKEGMLKLEQ SRLKWLRSSK 360 EKDRELEKMK LENERMQLEN ERLELELELK EIEMGIKPKR IW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G186900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952693.1 | 0.0 | uncharacterized protein LOC101766818 | ||||
Refseq | XP_004952694.1 | 0.0 | uncharacterized protein LOC101766818 | ||||
TrEMBL | K3YT02 | 0.0 | K3YT02_SETIT; Uncharacterized protein | ||||
STRING | Si017397m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 3e-67 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G186900.3.p |
Entrez Gene | 101766818 |