PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G186900.2.p
Common NameLOC101766818, SETIT_017397mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 403aa    MW: 45215.9 Da    PI: 6.631
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G186900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.28.2e-2287183184
            trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessst 78 
                         +Wt ++v++L+ a++++++++ ++             ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++t ++ +++
  Seita.1G186900.2.p  87 KWTSDMVKLLVSAVSYIDDDIDADHgtssgrkkhamlKRKGKWRLVSSAMTERGFPVSPQQCEDKFNDLNKRYKRLTEILGRGTaCQIVEK 177
                         7**************999999987555677788999899*******************************************954888888 PP

            trihelix  79 cpyfdq 84 
                          ++++q
  Seita.1G186900.2.p 178 PALLEQ 183
                         777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2085210No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEGNLPPRAL IPGGAPFDLG QPFHFAAQPQ AAVQVHQGAF AAPAANQMQE PGNAVKASLS  60
DEEAAADGHH GRGKAAAAPA SQWHRVKWTS DMVKLLVSAV SYIDDDIDAD HGTSSGRKKH  120
AMLKRKGKWR LVSSAMTERG FPVSPQQCED KFNDLNKRYK RLTEILGRGT ACQIVEKPAL  180
LEQVSLSAKL KEEAKKHLNS KHLHYEEMCS YHNHNRHCLL DDPALQRSLR VALRSPDEQG  240
KKCSFGYDDE DDQMFLFDDD DDDDGFNDDL EASAEDHLHH RVHGNKKLKH DHEGGHCGSH  300
LSEVAAIDMN KMFAEGAGGS AAEKNLSGMN ATQIERERLK IKEGMLKLEQ SRLKWLRSSK  360
EKDRELEKMK LENERMQLEN ERLELELELK EIEMGIKPKR IW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G186900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952693.10.0uncharacterized protein LOC101766818
RefseqXP_004952694.10.0uncharacterized protein LOC101766818
TrEMBLK3YT020.0K3YT02_SETIT; Uncharacterized protein
STRINGSi017397m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-67sequence-specific DNA binding transcription factors