PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G178400.1.p | ||||||||
Common Name | LOC101771916, SETIT_016943mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HSF | ||||||||
Protein Properties | Length: 512aa MW: 56365 Da PI: 4.6077 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.9 | 1.9e-34 | 79 | 171 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y+++++++l+ +isw + gnsfvv+d+++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h+ F +++k+ Seita.1G178400.1.p 79 FLSKTYDLVSEPALDGVISWGAAGNSFVVWDPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRDSKH 160 9****************************************************************999.........************** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i r++s+ Seita.1G178400.1.p 161 LLKRIVRRRSS 171 *******9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.43E-33 | 74 | 168 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.1E-55 | 75 | 168 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.9E-37 | 75 | 168 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.9E-16 | 79 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.0E-30 | 79 | 168 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-16 | 117 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 118 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-16 | 130 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MDHTRPRAGA SGNPDAPYTA AAALLLEPKL EDEELPLQQL ASPAPFVSLD QLMPATGPAL 60 PEPPRPLEAL LQGQQLPPFL SKTYDLVSEP ALDGVISWGA AGNSFVVWDP STFARDVLPH 120 NFKHNNFSSF VRQLNTYGFR KVHADRWEFA HEDFLRDSKH LLKRIVRRRS SPAQQSSIQP 180 GSSSGESSLD PELHTLRREK NALLEEVARL KQEHRQTIEQ MSTLNHRLES AEDRQKQMVS 240 FLAKLLQNPS FVRQLKLHRE QKEIDSTRVK RKFLKHVPHG SIESGESSSQ HGGESGSHFP 300 ASSPMATCVQ DDIAELQNFL LEDDDLNFGM DPDNIGLDRV EAPDDIGALV QGFDTQEELE 360 LGSGIELLEM PPASGPLGQD PTIGRSKGKS VLCPGLDATS SEASYLGSIS DTMGVLSPST 420 MLGTASTMMD ADEEQMWGVD ASAPLQSTCS GSSQQTFSSL ASDPYLMDIG NKPEKFWDLD 480 FQTLDQEDLQ LDKCAIDDPT LQQQQRNMKK P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-24 | 76 | 171 | 17 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G178400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952622.1 | 0.0 | heat stress transcription factor A-3 | ||||
Swissprot | Q6H6Q7 | 0.0 | HSFA3_ORYSJ; Heat stress transcription factor A-3 | ||||
TrEMBL | K3YRP9 | 0.0 | K3YRP9_SETIT; Uncharacterized protein | ||||
STRING | Si016943m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9010 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 4e-68 | heat shock transcription factor A3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G178400.1.p |
Entrez Gene | 101771916 |
Publications ? help Back to Top | |||
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