PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G163600.1.p
Common NameLOC101760040, SETIT_019071mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 370aa    MW: 42499.2 Da    PI: 6.1313
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G163600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.4e-1983173286
            trihelix   2 WtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                         W+ ++ ++L+ a++++++++ +++     +++++W+ vs++m ergf  sp+qC +k+ +lnkryk+++e+ + + +++ +++ ++++q++
  Seita.1G163600.1.p  83 WSADMAKLLVSAVSYVDDDIDDAEhgsrvRRMGKWSLVSSAMTERGFAASPQQCADKFHDLNKRYKRVTEILGWGtACKIVEKPALLEQMN 173
                         *********************9766677799*****************************************9994599999999999995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-1680198No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEGNLQPHAL IPGGVSSDLE QPLHFVAQAQ TQVVQANQVT FAAPVENQMQ ELGNGEKASL  60
ISKEDPRGKA TASASQWPCR VNWSADMAKL LVSAVSYVDD DIDDAEHGSR VRRMGKWSLV  120
SSAMTERGFA ASPQQCADKF HDLNKRYKRV TEILGWGTAC KIVEKPALLE QMNISEKLKE  180
EARKHLSSKN LHYEQMCSYH NHNRVSLLDD PVLQKMLRRM ARGSPVEQGK KCTIRNVEDD  240
LMLLSDDEEE DEEFNDDLEV SAEEHRHQGV HATKKLKHDR EEGSHLSQDV AINMKIIQIQ  300
RERLKIRRET LEMRQSHLER MKSHKEQDKE LQKMRLDNEM MELENDQLEL EMERKIKEME  360
MMGIKPQRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G163600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952514.10.0uncharacterized protein LOC101760040
TrEMBLK3YXS30.0K3YXS3_SETIT; Uncharacterized protein
STRINGSi019071m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5812922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.12e-44