PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G163500.1.p
Common NameSETIT_019502mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 355aa    MW: 40618.1 Da    PI: 6.8428
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G163500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.31.7e-1765157186
            trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                         +W  ++ ++L+ a++++++++ ++       +++++W+ vs++m +rgf  sp+qC++k+ +lnk+yk ++e+ + + +++ +++ ++++q
  Seita.1G163500.1.p  65 KWNGDMAKLLVSAVSYIDDDIDADHgsrsrvKRMGKWKLVSSAMTKRGFAASPQQCEDKFHDLNKKYKSLTEILGWGtACGIVEKPALLEQ 155
                         7**************888888875444555699****************************************999845999999999999 PP

            trihelix  85 le 86 
                         ++
  Seita.1G163500.1.p 156 MN 157
                         85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-1563181No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEGNLRPHAL TPGGAPSNME QPLCFAPAVN QMQEIENGIK ASLSFNNEPR GRATASASQR  60
QRRVKWNGDM AKLLVSAVSY IDDDIDADHG SRSRVKRMGK WKLVSSAMTK RGFAASPQQC  120
EDKFHDLNKK YKSLTEILGW GTACGIVEKP ALLEQMNLSD KLKDEARKLL SSKNLHYEEM  180
CSYHNRNRQC LLDDPSLQRM LWSMARGSPV EQGMECPTGY GEDDHIVLPD DKEEGGDEFN  240
DDPEGSTEDH HHQRVHGTKM LKHDREEGSH LSQDAANDMK AIQIKRERLK IKRETLEMRQ  300
SHMKQMRSIK EQDKELRKMR LDNEMMELEN DKLELELELK IKEMEMMGIK SKRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G163500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952514.11e-173uncharacterized protein LOC101760040
TrEMBLK3YYZ60.0K3YYZ6_SETIT; Uncharacterized protein
STRINGSi019502m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5812822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.16e-45