PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G147000.1.p
Common NameLOC101769913, SETIT_017804mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 323aa    MW: 35258.1 Da    PI: 7.1257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G147000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-103685154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r++ +  rE+ RRd++N+ f+eL   l ++     ++++Ka+iL  +++ +k+L
  Seita.1G147000.1.p 36 RKVQKADREKMRRDKLNEQFQELGNTLDPD----RPRNDKATILGDTIQMLKDL 85
                        5677889********************997....799***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-1332105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.38E-73385No hitNo description
PROSITE profilePS5088812.93585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-1335108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-73685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-74191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDPRGHQPPE DGFFHPRDAD MSQRTECKAQ GPSSARKVQK ADREKMRRDK LNEQFQELGN  60
TLDPDRPRND KATILGDTIQ MLKDLTSHVN KLKAEYTSLS EEARELTQEK NELRDEKASL  120
KSEVDNLTNQ YQQRMRVLYP WAGMEPSVVI GPPPAYPYPV PVPIPSGAVP MHPQLQAYPF  180
FRSQTSGTIP NACTPYMAYT QPCHPPTDQP SNQPNSPVAN SSSHRSNSPA RDCRSKSSTL  240
QQASCGVRSS DVGDVATDLE LKTPGSSGPS HSEIANKDSS SDLKTKKQCI KQINCSSITE  300
GTSSSRCSSS GPPDVSNSVG DG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G147000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9755130.0EU975513.1 Zea mays clone 491262 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
GenBankHQ8587870.0HQ858787.1 Zea mays clone UT1801 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952384.10.0transcription factor bHLH121
TrEMBLK3YU580.0K3YU58_SETIT; Uncharacterized protein
STRINGSi017804m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.19e-68bHLH family protein