PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G103400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 361aa    MW: 38586.3 Da    PI: 7.226
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G103400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19266299134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs+C +t+Tp+WR gpdg+ tLCnaCG++y+ ++
  Seita.1G103400.1.p 266 CSHCASTETPQWRAGPDGPGTLCNACGIRYKMNK 299
                         *******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.323260298IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-18260314IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-15262323No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15264300IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.56E-18265321No hitNo description
PfamPF003203.0E-17266300IPR000679Zinc finger, GATA-type
PROSITE patternPS003440266291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MREHRFLYDF PDVADCEGSC VGGGGPPCLL HAGLCCPDDP LETIMDNPDV FSDDLLEDLF  60
IAAALPPPHR GWLPITIGGG GERVVDVDGA DVGYRDRGGA SSDDGAPRLP AAHAAMSADD  120
SSWTTSSVAT KSPPSSRLPA HAAMSDSSWT PLETESPPPP PPRMPVHAAA LSDSSWAPSS  180
LETESSPPSV SRLVVPRKKR DSSVKRGKRL WSLDIPNVPA SSDNSSGRDD GDQDGRRNII  240
HGGGGGVRQR LLIARPPRNS RTQRACSHCA STETPQWRAG PDGPGTLCNA CGIRYKMNKL  300
LPEYRPSTSP SFRSDKHSNR HRKVVKLREK VKVEKIVNMP LAPADCGGDF MDVCKYISTG  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G103400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954732.10.0GATA transcription factor 2
TrEMBLA0A368PJ620.0A0A368PJ62_SETIT; Uncharacterized protein
STRINGSi019572m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.19e-23GATA transcription factor 1