PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G087900.1.p | ||||||||
Common Name | LOC101765728, SETIT_019554mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 24184 Da PI: 10.199 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.5e-19 | 110 | 164 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t q Le+ F++++ +s++e++eLA+++gL+ rqV vWFqNrRa+ k Seita.1G087900.1.p 110 RKKLRLTGAQAAMLEDSFRSHNILSHAEKQELARRVGLSARQVEVWFQNRRARTK 164 677889***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 110.9 | 8.6e-36 | 110 | 199 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+ q+++LE+sF++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+++ ++Lr++ Seita.1G087900.1.p 110 RKKLRLTGAQAAMLEDSFRSHNILSHAEKQELARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLHRWCDRLTDENARLRRDLADLRAS 199 69*************************************************************************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.038 | 106 | 166 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-18 | 108 | 175 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-15 | 108 | 170 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.44E-13 | 110 | 167 | No hit | No description |
Pfam | PF00046 | 1.8E-16 | 110 | 164 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-18 | 110 | 164 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.9E-6 | 137 | 146 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 141 | 164 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.9E-6 | 146 | 162 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.3E-7 | 166 | 198 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.7E-15 | 166 | 209 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSSVTTAGSA EEHPVSVEEF VGAHLSLGIG GGEGSSRSSP RQQGRPRTVQ LFGEVLSLQV 60 DDECHDGARR REPAAAAGRK KRDHSGSGAR QNKKARTFQD GGDGGGGGGR KKLRLTGAQA 120 AMLEDSFRSH NILSHAEKQE LARRVGLSAR QVEVWFQNRR ARTKLKQTEV DCELLHRWCD 180 RLTDENARLR RDLADLRASA TARLAVCAAC CDKQVAARAG EMA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 166 | RRARTKLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G087900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954712.1 | 1e-160 | putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | K3YZ46 | 1e-158 | K3YZ46_SETIT; Uncharacterized protein | ||||
STRING | Si019554m | 1e-159 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 9e-31 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G087900.1.p |
Entrez Gene | 101765728 |