PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G050400.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bZIP | ||||||||
Protein Properties | Length: 485aa MW: 51613 Da PI: 8.6352 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.5 | 4.3e-11 | 158 | 198 | 3 | 43 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + k rr+++NReAAr+sR+RKka+i++Le+ L++ + Seita.1G050400.7.p 158 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 198 67999*************************86555555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.4E-5 | 156 | 209 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.5E-8 | 156 | 202 | No hit | No description |
PROSITE profile | PS50217 | 8.979 | 158 | 202 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-8 | 159 | 198 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-7 | 160 | 203 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 163 | 178 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.3E-27 | 244 | 329 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MGDRPWQQPP EQASYPHAGM IQAASSSAHG GIIKEPGGGY DMAEFDQALF LYLNSQDQTS 60 AAHHQDQPQT LNIFPSQPMH IAEPAPKGSM GTSNTAPIAG AGPSKQPPPP SNHPSRPTPA 120 ALKDGKPAGV KREGSSGAAT GSGTPSTSNQ QEGPRTPDAK TLRRLAQNRE AARKSRLRKK 180 AYIQNLETSR IRLSQLEQEL HRSRNQGAVF GGGALSGSNG GLSPEAAWFD MEHARWQEEH 240 GKMMRHLRAA LEAADQQHPA APAPAPAADA QLRQLVDAAA AHHGVLADLK AAVASADAFH 300 LVSGAWASAA ERCFLWIGGF RPSELIKVAA RHAEPLTEPQ AMGVCGVQQW AREAEAALDH 360 ELQAMHRSVS EAVSSDAAAL LCPYSDVPGY MATMSLAIAK LASLEAFVRQ ADALRLQALH 420 RLPQILTARQ AARCFLAIAD YSHRLRALSE LWHTRPRHEP VATIPAAGPS HGQPFQSSRA 480 GGLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G050400.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU951316 | 2e-57 | EU951316.1 Zea mays clone 695528 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951578.1 | 0.0 | transcription factor TGAL9 isoform X3 | ||||
Swissprot | Q52MZ2 | 1e-145 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | A0A368PGX7 | 0.0 | A0A368PGX7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J04905.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-102 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G050400.7.p |