PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.1G030600.5.p | ||||||||
Common Name | LOC101752605, SETIT_016883mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 530aa MW: 54867.6 Da PI: 7.6252 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.7 | 4e-08 | 450 | 488 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 lFe+ ++yp+ +e+ LA + gLt +qV++WF N R + Seita.1G030600.5.p 450 LFENflHPYPKDHEKDVLAGRSGLTRNQVSNWFINARVR 488 5776679******************************88 PP | |||||||
2 | BELL | 35.5 | 2.6e-12 | 305 | 381 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeava......glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e q+ k+ Ll+ll+ +d++Y+q+ +++q + F+a + g g+ + + +A +a+S +r L+ +ia+qi Seita.1G030600.5.p 305 RGEAQRVKSDLLKLLQLMDEKYNQCLDEIQSTTAKFNALMhsgggaGGGNGSICAPFAHRAVSAVYRGLRRRIAGQI 381 5689999*******************************963333226677899***********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.1E-4 | 235 | 379 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-25 | 240 | 378 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.305 | 429 | 492 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-25 | 432 | 505 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.1E-8 | 432 | 496 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.07E-11 | 432 | 493 | No hit | No description |
SuperFamily | SSF46689 | 1.45E-15 | 433 | 501 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-15 | 449 | 488 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 530 aa Download sequence Send to blast |
MASNPSMFSP IGVDAMTGGY FMVGGGGGMM SADVPHFHPS VLLEHGGFGF GLGDAAVGAT 60 ATASDLAANN VMLASFASQL VATGPAPQDD LIAGRTPPEE MDEGYGADSG VSCVAANLQC 120 PGHSGGAMAV WPSSSSKKPA GTWSSAGGSR AVSVHAPYHH LTTLPEVAGF HYPLAAAAAA 180 AAAAVIAPAS SELSLTLCSK SSPDSGLNAA GQCSSGASRS ALTELHPRAR SRPAAHFSVV 240 VARSRYAAVA QEVLNDVVGH MLNGVAAAAA DSCSGIDGGG SAGAPSVVSS SNRLMASSED 300 AGERRGEAQR VKSDLLKLLQ LMDEKYNQCL DEIQSTTAKF NALMHSGGGA GGGNGSICAP 360 FAHRAVSAVY RGLRRRIAGQ IVAAATRATG WGGESSSSVT AAGGDAERSW ESEFIKKHWA 420 AQQLRRGEQQ CWRPQRGLPE KSVAVLKAWL FENFLHPYPK DHEKDVLAGR SGLTRNQVSN 480 WFINARVRLW KPMIEEMYQD LKKSSGVGGQ GPAMEPHTSK RRICELEGQ* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.1G030600.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951423.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_004951424.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_004951425.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_004951426.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_022680719.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_022680731.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_022680746.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_022680778.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_022680845.1 | 0.0 | homeobox protein ATH1 | ||||
TrEMBL | K3YRI9 | 0.0 | K3YRI9_SETIT; Uncharacterized protein | ||||
STRING | Si016883m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32980.1 | 2e-56 | homeobox gene 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.1G030600.5.p |
Entrez Gene | 101752605 |