PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G026900.1.p

Common Name

LOC101774908, SETIT_020234mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 200aa MW: 21017.6 Da PI: 10.7113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G026900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.4	4.4e-07	24	80	6	53
HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-.STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as........kapskK.lsKaeiLekAveYIks 53 + +Er+RR+++N +++L l+ + +s + ++ ++ + Le+A YI++ Seita.1G026900.1.p 24 KTVERNRRNQMNALYSRLDLLVRSgSSpssappevQ-RGAPvMTRPDRLEEAAAYIRQ 80 679*******************776***55.55555************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.6E-7	23	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.74E-6	24	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-4	25	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MEMPPPPPPF GSPAAAGGGK PDRKTVERNR RNQMNALYSR LDLLVRSGSS PSSAPPEVQR 60 GAPVMTRPDR LEEAAAYIRQ TTERVERLKE RKRELTAARA SSSQQGSGSS SAAGPAAVEV 120 EVQHLGSGLH AILVTGGRPS DGASFHRAVR AVEEAGGEVQ NAHFSVVGAR AIYTIHTLVA 180 EGGIERVEQR LKAALRGGA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G026900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954617.2	1e-139	transcription factor bHLH162
TrEMBL	K3Z116	1e-138	K3Z116_SETIT; Uncharacterized protein
STRING	Si020234m	1e-138	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11987	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	4e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.1G026900.1.p
Entrez Gene	101774908