PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G014000.1.p
Common NameLOC101769097, SETIT_017753mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 332aa    MW: 36060.9 Da    PI: 8.0571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G014000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12189214126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         y   +C+++ +tG+C yGd+CkF+H+
  Seita.1G014000.1.p 189 YQPDICKDYKETGYCGYGDSCKFMHD 214
                         67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9187219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878188216IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7188215IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10189214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12189219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.9E-13251311IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139206.6E-8265305No hitNo description
SuperFamilySSF578507.61E-13265307No hitNo description
SMARTSM001841.6E-4266303IPR001841Zinc finger, RING-type
CDDcd001622.34E-7266305No hitNo description
PROSITE profilePS5008910.527266304IPR001841Zinc finger, RING-type
PROSITE patternPS005180281290IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MADGGGSGRE PGSGAGTAPV CSFVRKPPKN IRKRPAAPAG SDDDDGGGGG ALAALRSKKG  60
PSSAGKLVFS SADASSEPRR FQYESSRTIQ STDSRATATL ETETEFDRDA RAIRERQLKQ  120
AEEALKKNPS GAASASASGA GEVYKGIHGY TDHKAGFRRE HTVSSEKAGG SHGPLRASAH  180
IRLSARFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQMEKEWEE AEKARKRRIA  240
MGGGGSDDEA AEDEDDDDEE ALPFACFICR QPFVDPVVTK CKHYFCEHCA LKHHSKNKKC  300
FVCNKATLGI FNAAQEIRKK MAQDKKQQQE Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-63143218317RING finger protein 113A
5z58_M6e-63143218317RING finger protein 113A
6ff4_t6e-63143218317RING finger protein 113A
6ff7_t6e-63143218317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G014000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951287.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-174C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLK3YU040.0K3YU04_SETIT; Uncharacterized protein
STRINGSi017753m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-122C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]