PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G013200.1.p | ||||||||
Common Name | LOC101766664, SETIT_017482mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 388aa MW: 40565 Da PI: 8.0367 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.2 | 7e-14 | 118 | 168 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h ++Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq Seita.1G013200.1.p 118 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 168 789*************************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.14E-14 | 114 | 172 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-17 | 116 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.555 | 116 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-11 | 118 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-13 | 118 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-12 | 122 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010374 | Biological Process | stomatal complex development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MADGLCELMV DGHRDLRHLS GAEDLFSILE TWEECMNGGG GGGGGGSSEA MPAYSQSSTG 60 GSDSGAVAGA RPAANSRRRS RDEERGVGRG APVPKKQKVS AAAAITAQDA AADEGAAKMS 120 HIAVERNRRK QMNEHLAVLR SLMPCFYVKR GDQASIIGGV VDYIKELQQV LRSLEAKKHR 180 KAYAEQVLSP RTTVSAASPR PLVKPTPPLS PRVAVPISPR TPTPGSPYKP PPAGGAAAGS 240 RVPHPAAYMM PSPAMTPATS SSSSSYSHDQ QHYPATSQPY LPTLDSLVTE LAAQAAGAGR 300 PAAAGLALPD VRVEFAGPNL VLKTVSHRAP GQALKIIAAL ESLSLEILHV SVSTVDDTMV 360 HSFTIKIGIE CELSAEELVH EIQQTLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 97 | RRRSRDEERGVGRGAPVPKKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G013200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036901 | 1e-104 | BT036901.1 Zea mays full-length cDNA clone ZM_BFb0146M03 mRNA, complete cds. | |||
GenBank | EU975896 | 1e-104 | EU975896.1 Zea mays clone 504696 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951281.1 | 0.0 | transcription factor SPEECHLESS | ||||
TrEMBL | K3YT87 | 0.0 | K3YT87_SETIT; Uncharacterized protein | ||||
STRING | Si017482m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53210.1 | 3e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G013200.1.p |
Entrez Gene | 101766664 |