PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G009800.1.p
Common NameLOC101752465, SETIT_017529mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 379aa    MW: 40315.9 Da    PI: 5.0129
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G009800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30178236259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++ tY+geHnh 
  Seita.1G009800.1.p 178 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERSRSDPNTFILTYTGEHNHA 236
                         79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012175.2E-124157No hitNo description
PRINTSPR012175.2E-1288109No hitNo description
Gene3DG3DSA:2.20.25.804.5E-30167238IPR003657WRKY domain
PROSITE profilePS5081133.247172238IPR003657WRKY domain
SuperFamilySSF1182909.94E-26176238IPR003657WRKY domain
SMARTSM007741.5E-36177237IPR003657WRKY domain
PfamPF031061.6E-25179235IPR003657WRKY domain
PRINTSPR012175.2E-12253265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEEDRYFDNW DLDTVVRLGC RRRLSPPRQP DNPFAAFLLP PPQPQKEKPA PAPAPEPAKE  60
PEADAGWRFP DLFAGGGQDG DELLMALLAA HPPLPQPTLP TPTPPPPPPT QQQQQQPPVV  120
AAVDAPPPQV RAAAAPASAL TRAQPSGRPV PGGVPRSKRR KNQVKKVVCH VPADGSSSDV  180
WAWRKYGQKP IKGSPYPRGY YRCSSSKGCA ARKQVERSRS DPNTFILTYT GEHNHAAPTH  240
RNSLAGTTRH KFPSSAAPQP PPPSVVVGGA GAGDAQDQHQ QPSPSPTSTS AAGLSPTTPL  300
RTPSMEEEDD EEDELMVEDM EMAGEDELLF LTDGDDAAPL EPRSSLFDIG DEPFLSFPWV  360
PAPTTAGEPA TGAAGAGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-20161239280Disease resistance protein RRS1
5w3x_D8e-20161239280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G009800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613700.0BT061370.1 Zea mays full-length cDNA clone ZM_BFb0140H07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951247.10.0probable WRKY transcription factor 27
SwissprotO046097e-52WRK22_ARATH; WRKY transcription factor 22
TrEMBLK3YTD40.0K3YTD4_SETIT; Uncharacterized protein
STRINGSi017529m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-46WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]