PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676791056
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 375aa    MW: 43362.5 Da    PI: 5.9911
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676791056genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.52.1e-33301212102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k yei++d+++++++sw++ g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F  g+++ll++ik
     676791056  30 FLIKAYEIVDDPNTDHIVSWNRGGTSFVVWDLHSFSTFLLPRHFKHSNFSSFIRQLNTYGFRKIEADR---------WEFANEGFLLGQRQLLKTIK 117
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++s
     676791056 118 RRAS 121
                   *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-5326119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.62E-3326119IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.3E-3526119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-2830119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-183053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNPFILQEGD SSPPTPKPIE GLHDIGPPPF LIKAYEIVDD PNTDHIVSWN RGGTSFVVWD  60
LHSFSTFLLP RHFKHSNFSS FIRQLNTYGF RKIEADRWEF ANEGFLLGQR QLLKTIKRRA  120
SFGSSSPPIH DPCNELRREK QLLMMELVCL RQQQLTTKSY IKAMEQRIEG AERKQRQMMS  180
FLARAMQSPS FLHQLLKQRD MRLKELEDEA AEREKGSSMS ELEALAMEMQ GYGKQRNNMK  240
EEEELVIERE LDDGFWEELL SNESLASTSS YLSLNPFPKC GYLYLHSFAV RFGLLGHVKR  300
VLKGEQAWKN LLLESSLMQL IEYLEAAVIP MDTTKHLSDQ FQEDHSLPSE TNNLISLIFE  360
KTDEVVLRAE TTVTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-232812118122Heat shock factor protein 1
5d5u_B6e-232812127131Heat shock factor protein 1
5d5v_B6e-232812127131Heat shock factor protein 1
5d5v_D6e-232812127131Heat shock factor protein 1
5hdg_A4e-23281218112Heat shock factor protein 1
5hdn_A4e-23281218112Heat shock factor protein 1
5hdn_B4e-23281218112Heat shock factor protein 1
5hdn_C4e-23281218112Heat shock factor protein 1
5hdn_D4e-23281218112Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap676791056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0497112e-47AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15.
GenBankCP0026862e-47CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477312.11e-176PREDICTED: heat stress transcription factor A-7a isoform X1
RefseqXP_018477314.11e-176PREDICTED: heat stress transcription factor A-7a isoform X2
SwissprotQ9SV121e-152HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A397ZIY81e-173A0A397ZIY8_BRACM; Uncharacterized protein
STRINGBo4g125760.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-147heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]