PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676790678

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HSF

Protein Properties

Length: 271aa MW: 32036.6 Da PI: 9.7054

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676790678	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.8	2.2e-35	20	111	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F++k+y+i++d+++++++sws+++nsf v+++++fa +Lp yFkh+nf+SFvRQLn+YgFkkv++e+ weF++++F +gk++ll++i+ 676790678 20 FITKTYNIVDDSRTNNIVSWSRDNNSFTVWEPDTFALICLPLYFKHNNFSSFVRQLNTYGFKKVDTER---------WEFANEYFLRGKRHLLKNIR 107 9**************************************************************999.........**************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ 676790678 108 RRKT 111 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	4.76E-34	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.0E-52	16	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	6.5E-36	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.3E-30	20	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-18	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-18	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	59	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-18	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDYNLPTPLE GLKKTGPTPF ITKTYNIVDD SRTNNIVSWS RDNNSFTVWE PDTFALICLP 60 LYFKHNNFSS FVRQLNTYGF KKVDTERWEF ANEYFLRGKR HLLKNIRRRK TPSQAQSLEN 120 DRFGLEQEIQ GMRRDKAALV VELVRLKRKQ ESVKTYLRLM EEKLKTTEKK QEMAMDFLLN 180 KIKKPDFLQS LRKRKQQGIE NLEQRHEMFS GHGVEDHETF VKAEPEEYSV DIGDQFGGVF 240 GYGDEVQIAS MEGQRGLKWR WIVKDFGRFL C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-22	11	111	17	131	Heat shock factor protein 1
5d5v_B	5e-22	11	111	17	131	Heat shock factor protein 1
5d5v_D	5e-22	11	111	17	131	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00541	DAP	Transfer from AT5G43840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676790678

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006403174.1	1e-152	heat stress transcription factor A-6a
Swissprot	Q1PDN3	1e-137	HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBL	V4LQ79	1e-151	V4LQ79_EUTSA; Uncharacterized protein
STRING	XP_006403174.1	1e-152	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15683	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43840.1	1e-128	heat shock transcription factor A6A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]