PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676790428
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24109.9 Da    PI: 10.0009
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676790428genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689.1e-221860345
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               i+ +s rqvtfskRr+g++KKA+EL++LC+ae+ +i++s+  k
  676790428 18 IKKESHRQVTFSKRRTGLFKKASELCTLCGAEIGIIVYSPAKK 60
               8999***********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.17868IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-29867IPR002100Transcription factor, MADS-box
CDDcd002652.06E-33984No hitNo description
SuperFamilySSF554559.55E-28987IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-171030IPR002100Transcription factor, MADS-box
PfamPF003198.3E-251764IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSKKKESIGR QKIPMVKIKK ESHRQVTFSK RRTGLFKKAS ELCTLCGAEI GIIVYSPAKK  60
PFSFGHPSVE SVLDRYLSRN DLSLAQTEQT HGNVATSYEL NMQWTKILSE VEEEKKKGQV  120
MAEMKKANAT WSMTKWWEKP VVEMNMVQLQ EMKYVLELRK IVISGTKTAP YDKVKEDVFG  180
FLDNNKVTAP SYINLASGLS NGYNFSYGNG CF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14881174MEF2C
5f28_B1e-14881174MEF2C
5f28_C1e-14881174MEF2C
5f28_D1e-14881174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676790428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547572.11e-118agamous-like MADS-box protein AGL61
SwissprotQ4PSU41e-111AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A397Y7Y51e-117A0A397Y7Y5_BRACM; Uncharacterized protein
STRINGBo8g099550.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-113AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]