PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676789924

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 336aa MW: 36980 Da PI: 9.8509

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676789924	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	9.7e-05	150	190	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq 676789924 150 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 190 668889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.877	140	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-11	143	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.02E-4	148	194	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.5E-7	148	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGDTTEDQDG RAMVEAAGGP SFSELLMLSD GFLSSSDHHR EDNSGDGGED SFGFVFSGTN 60 GSKMLCFSGD CQNGDESLFL EPSLTSGVSV SDPSCTVNTC KNSNDTCADE KSTKSSNKKR 120 TGSISGQNMD HNPTKKCKRN QDKSSVGIAK VRKERLGERI AALQQLVSPY GKTDAASVLH 180 EAMGYIKFLQ DQIQVLCSPY LINYSLDGGV VTGDVTPGKK VNDLRSRGLC LVPVSSTVHV 240 ENSNGADFWS PATMGKSTTV QKLSSRRPFC IRLQRRKKMR RKKMRTKKLT TKNKITYTLI 300 VKLTIEYLTT RKLMTKNRTT KQMTTKHLNT EELNIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	280	QRRKKMRR
2	275	288	RKKMRRKKMRTKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676789924

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009145780.1	1e-166	PREDICTED: transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	1e-141	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A078I5R4	1e-165	A0A078I5R4_BRANA; BnaA05g20570D protein
TrEMBL	A0A397ZLA2	1e-165	A0A397ZLA2_BRACM; Uncharacterized protein
TrEMBL	M4E0Y1	1e-165	M4E0Y1_BRARP; Uncharacterized protein
STRING	Bra022428.1-P	1e-166	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-134	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]