PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789622
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 264aa    MW: 29818.7 Da    PI: 8.792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789622genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-0597119223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ C+++++++ +L  Hi+  H
  676789622  97 SCSVCSRVYPTSRLLSIHISEaH 119
                6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.346994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM00355596119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.091134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAMGMAVDTA GELGFPYWTP SRRIFSPDSP FFASGNVERE LLAKQVALGL TEDEINNLQK  60
IVETENIRIS CPIVGCPERL KSLDNFEDHY NARHTASCSV CSRVYPTSRL LSIHISEAHD  120
SFFQAKVARG YDMYECLVEG CGLKFKNYKA RHRHLVDKHK FPTTFEFFKK TQLSKKRREK  180
LQRQRVPKLK HDEEKEEASS DAMEVEDKAS LDGLVSALST LTTSDTTPSN VSFGRRHGRG  240
LTFVPRSVHR EERTKSSSAA GPTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789622
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420037.11e-176PREDICTED: zinc finger protein 511
TrEMBLA0A178UDE41e-173A0A178UDE4_ARATH; Uncharacterized protein
TrEMBLQ0WRF41e-173Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein
STRINGXP_010420037.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-153zinc ion binding;nucleic acid binding;zinc ion binding