PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676788994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HB-other | ||||||||
Protein Properties | Length: 162aa MW: 18912.3 Da PI: 9.4193 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.6e-20 | 27 | 82 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++++++q+++Le++F+++++p++ +r+ L ++l+Lt +q+k+WFqN+R++ k 676788994 27 KKTYQRHSNHQIQRLEAYFKECPHPDEVQRRNLGEELKLTPKQIKFWFQNKRTQAK 82 78999************************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-18 | 6 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.293 | 24 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 25 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.6E-18 | 26 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.34E-15 | 27 | 85 | No hit | No description |
Pfam | PF00046 | 2.9E-17 | 27 | 82 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDSSRDSSSS DERETSMNTS DGVQGDKKTY QRHSNHQIQR LEAYFKECPH PDEVQRRNLG 60 EELKLTPKQI KFWFQNKRTQ AKAQSEKADN ASLRAENMKI RRENEAMQEA LRTVTCPPCG 120 GPRPGKEERK LYLHNLRAHN ACLKAQINMI YILYLYIRSI EN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676788994 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590801.1 | 7e-74 | PREDICTED: homeobox-leucine zipper protein HDG9-like | ||||
Refseq | XP_022553332.1 | 9e-76 | homeobox-leucine zipper protein HDG9-like | ||||
Refseq | XP_022562316.1 | 9e-76 | homeobox-leucine zipper protein HDG9-like | ||||
Swissprot | Q9FFI0 | 2e-60 | HDG9_ARATH; Homeobox-leucine zipper protein HDG9 | ||||
TrEMBL | A0A0D3CTZ1 | 2e-72 | A0A0D3CTZ1_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g069620.1 | 3e-73 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17320.1 | 6e-56 | homeodomain GLABROUS 9 |
Publications ? help Back to Top | |||
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