PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G17320.1 | ||||||||
Common Name | HDG9, HDGL2-9, MKP11.28 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 718aa MW: 81068.1 Da PI: 7.6263 | ||||||||
Description | homeodomain GLABROUS 9 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 27 | 82 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++t+eq+++Le++F+++++p++ +r+ L ++l+L+ +q+k+WFqN+R++ k AT5G17320.1 27 KKGYHRHTNEQIHRLETYFKECPHPDEFQRRLLGEELNLKPKQIKFWFQNKRTQAK 82 5778899**********************************************988 PP | |||||||
2 | START | 100.9 | 2.3e-32 | 243 | 461 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 3 aeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 ae+a e++++++ ++ +W+kss ++++++ +++ + + + e +++++vv m++ +l ++l +W + ++ +a+t+ v++s AT5G17320.1 243 AEKAVSEVLSLIQMDDTMWKKSSiddrlvidPGLYEKYFTKTNTN--G-RPESSKDVVVVQMDAGNLIDIFLTAE-KWARLFPtivnEAKTIHVLDSV 336 789999********************9999555555555555544..4.67**************9999999999.99999999999*********98 PP .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..H CS START 89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp..h 178 ++ +++ +l lsplvp R+f+++R+++q ++ +w+i+dvS ++ + s+ ++++pSg li+ ++ g skvtw+ehv ++++ + h AT5G17320.1 337 dhrgkTFSRVIYEQLHILSPLVPpREFMILRTCQQIEDNVWMIADVSCHLPNIEF-DLSFPICTKRPSGVLIQALPHGFSKVTWIEHVVVNDNRVrpH 433 8999*999999*************************************9999987.9***********************************99888* PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 l+r l+ g ga++w+ tl+r ce+ AT5G17320.1 434 KLYRDLLYGGFGYGARRWTVTLERTCER 461 **************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.09E-17 | 20 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-18 | 21 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.791 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-16 | 26 | 88 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.5E-16 | 27 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.52E-16 | 27 | 85 | No hit | No description |
PROSITE profile | PS50848 | 39.232 | 232 | 464 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-26 | 235 | 461 | No hit | No description |
CDD | cd08875 | 1.53E-79 | 239 | 460 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.8E-7 | 240 | 420 | IPR023393 | START-like domain |
SMART | SM00234 | 3.7E-14 | 241 | 461 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-26 | 243 | 461 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.86E-7 | 517 | 709 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0025074 | anatomy | embryo sac | ||||
PO:0025281 | anatomy | pollen |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MDFTRDDNSS DERENDVDAN TNNRHEKKGY HRHTNEQIHR LETYFKECPH PDEFQRRLLG 60 EELNLKPKQI KFWFQNKRTQ AKSHNEKADN AALRAENIKI RRENESMEDA LNNVVCPPCG 120 GRGPGREDQL RHLQKLRAQN AYLKDEYERV SNYLKQYGGH SMHNVEATPY LHGPSNHAST 180 SKNRPALYGT SSNRLPEPSS IFRGPYTRGN MNTTAPPQPR KPLEMQNFQP LSQLEKIAML 240 EAAEKAVSEV LSLIQMDDTM WKKSSIDDRL VIDPGLYEKY FTKTNTNGRP ESSKDVVVVQ 300 MDAGNLIDIF LTAEKWARLF PTIVNEAKTI HVLDSVDHRG KTFSRVIYEQ LHILSPLVPP 360 REFMILRTCQ QIEDNVWMIA DVSCHLPNIE FDLSFPICTK RPSGVLIQAL PHGFSKVTWI 420 EHVVVNDNRV RPHKLYRDLL YGGFGYGARR WTVTLERTCE RLIFSTSVPA LPNNDNPGVV 480 QTIRGRNSVM HLGERMLRNF AWMMKMVNKL DFSPQSETNN SGIRIGVRIN NEAGQPPGLI 540 VCAGSSLSLP LPPVQVYDFL KNLEVRHQWD VLCHGNPATE AARFVTGSNP RNTVSFLEPS 600 IRDINTKLMI LQDSFKDALG GMVAYAPMDL NTACAAISGD IDPTTIPILP SGFMISRDGR 660 PSEGEAEGGS YTLLTVAFQI LVSGPSYSPD TNLEVSATTV NTLISSTVQR IKAMLKCE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18418263 | 0.0 | ||||
Genevisible | 250089_at | 0.0 | ||||
Expression Atlas | AT5G17320 | - | ||||
AtGenExpress | AT5G17320 | - | ||||
ATTED-II | AT5G17320 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in anthers with highest levels in the tapetum and pollen grains, and chalazal end of the embryo sac. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G17320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G17320 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005238 | 0.0 | AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_197234.1 | 0.0 | homeodomain GLABROUS 9 | ||||
Swissprot | Q9FFI0 | 0.0 | HDG9_ARATH; Homeobox-leucine zipper protein HDG9 | ||||
TrEMBL | A0A178UD74 | 0.0 | A0A178UD74_ARATH; Uncharacterized protein | ||||
STRING | AT5G17320.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8468 | 15 | 31 | Representative plant | OGRP145 | 15 | 136 |
Link Out ? help Back to Top | |
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Phytozome | AT5G17320.1 |
Entrez Gene | 831598 |
iHOP | AT5G17320 |
wikigenes | AT5G17320 |