PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788710
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRF
Protein Properties Length: 285aa    MW: 32838.8 Da    PI: 7.9912
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788710genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.41.1e-22102143142
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                daepgrCrRtDGKkWRCs+++ +++k+C+rH+hrg++rs+++
  676788710 102 DAEPGRCRRTDGKKWRCSKEASPDSKYCDRHMHRGKNRSSRK 143
                79*************************************986 PP
2QLQ59.78.3e-213065237
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               +FT +Q+++L++Q+l++KyLaan+PvPp+Ll+ i++
  676788710 30 PFTESQWEELENQALVFKYLAANVPVPPHLLFLIRR 65
               8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.5E-142965IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.6463065IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-153064IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.399102147IPR014977WRC domain
PfamPF088791.8E-18103143IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKHIDSADCS NTSSSSSVSS LYLFMATRIP FTESQWEELE NQALVFKYLA ANVPVPPHLL  60
FLIRRPFFLS SCSSSSSSSP SNLFSPHFGW NVYEMGLRRK IDAEPGRCRR TDGKKWRCSK  120
EASPDSKYCD RHMHRGKNRS SRKHLPPLPP PQFYVSSTPS LSLDSSLSSS RVRSKRSGYM  180
DDFFSIEPLE SIKSCSGLAM KEDDGSCEYE SLKESEKQPD RSCFIRGTDL RTLERPFMRE  240
EKLKQRNDKD YDDDEEDEDQ RSKRFYKFLD EWPSSKSSVS TSLFI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102342.11e-134PREDICTED: growth-regulating factor 6
SwissprotQ9ZQ121e-109GRF6_ARATH; Growth-regulating factor 6
TrEMBLM4DFB21e-136M4DFB2_BRARP; Uncharacterized protein
STRINGBra015184.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.11e-98growth-regulating factor 6
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]