PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788192
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 363aa    MW: 40540.1 Da    PI: 9.6705
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788192genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.82.1e-1620105270
   trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                Wt  e+l+Liea++ +eer  r++                   + +W+++ +++ ++g+ rs++qC++kw+nl ++ykki+e e  
  676788192  20 WTVGETLVLIEAKKMDEERRVRRSmglpplqikkpeiqnrrPPELRWKWIEEYCCRKGCVRSQNQCNDKWDNLMRDYKKIREYETW 105
                *************97777766665577777777788877778899************************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5281293IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.1E-41495IPR009057Homeodomain-like
PfamPF138372.8E-1219105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MADPSGGGEM VMREYRKGNW TVGETLVLIE AKKMDEERRV RRSMGLPPLQ IKKPEIQNRR  60
PPELRWKWIE EYCCRKGCVR SQNQCNDKWD NLMRDYKKIR EYETWRVHSS FNTGSSSSAA  120
AASSSYWNMD KSERKEKNLP SNMLPQIYEA LVELVEKKSL LSSSSSSSTA TVVAVGNGNG  180
GSSGGQILRV CQESLGFVAP MMAQPMHQIP ATIVLPLPPP PPRPQYLVLS HPRPPQLPPS  240
TFHAEPTQPI ADTSQAKRRR TTRGETTAGG EREAEEVEVG AALSKSATMI AQGIKESEER  300
QERRHKEMVR LQERRLKIEE SKAEINRQGM SGLVDAINKL GTSIIALVSP SCHNNQNHQG  360
GSP
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788192
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0060685e-33AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence.
GenBankCP0026855e-33CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410730.21e-159uncharacterized protein LOC18027116
TrEMBLV4MI011e-156V4MI01_EUTSA; Uncharacterized protein
STRINGXP_006410730.11e-157(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-119Trihelix family protein